I trick them. bedtime is when they get their clean litter box full of hay. I have two of the same litter box, and while I prepare the new one I know they are watching me. So then I switch out the dirty for the clean and they jump right in and start eating the hay. That's when I quietly close the door to their condo. By the time they realize they pretty much accept that it's bedtime. When I go out during the day I get a small handful of kibbles and say "upstairs! Kibbles!" And they usually go to the top floor to eat them and that's when I close the door. To be honest though there have been times when I've just had to gently push a stubborn bunny butt into their home.
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