My Kirby is still a very skiddish bunny and he's over 2 years old. He jumps and runs away at the slightest unfamiliar noise. He's been hilariously known to be in the midst of happily eating a piece of lettuce -- then a noise from somewhere in the busy streets of the city -- and next thing you know the lettuce is on the floor, the bunny is hiding in a box. I know he is learning to love me, but same thing as yours: he doesn't like to be held, he doesn't even like me sitting next to him as he will generally get up and walk away. If I sit near him on the floor, he will come over and sniff me out. Sometimes demand to be pet. But he likes to be the boss of the touching initiation!
I will say this. I have broken down several times and tried to catch him and hold him for longer than he was comfortable with. He was very upset with me and generally ignored me for over a day after the event. I don't recommend it
All things considered, in our 2 months together he has made great strides, and so will your bunny. You just have to spend a lot of time calmly being in the same space as her. The quieter the better, but I would recommend talking calmly to her so she gets to know your voice and how you look. Keep her life as
routine as possible in the adjustment period and she will soon learn that you coming in = food is coming! Let her sit in her spots and I wouldn't try to coax her out of them. As soon as she is comfortable in her little spot, she will find
more places to be comfortable in... It may take a few weeks if she is anything like my Kirby, but she'll get there.
Explain to your roommate the perils of being a rabbit. Limit holding your rabbit to once every couple of days or less if you can manage. Or alternate days with your roommate. She will thank you both for it. If one of you treats her right and the other not so much, I guarantee she'll bond with you more strongly. Kirby likes me more than my husband