Which vaccines did your rabbit get? If she doesn't react well to them, it might be worth it to ask for something else next time. I'm from France, so our vaccines might not be the same but for example I ask for Lapinject/cunicare for VHD and Dervaximyxo for the myxomatosis. I refuse Nobivac which has recently become the vaccine vets will give automatically to your rabbit if you don't ask specifically for something else - it is true that Nobivac has a strong effect and is efficient for 12 months for myxo and VHD, but being stronger, it also has more adverse effects than older vaccines, I know several people whose rabbit died from it and a pharmaco-vigilance (I don't know the word for that in English) report was made about 3 years ago about it reporting several cases of death. I wouldn't use that vaccine on a weak rabbit or with a chronic problem as it seems to tend to make past problems occur again (like GI stasis, previously cured abscess...). The problem being that a lot of vets don't know about it.
But well, if your rabbit recovered, that's great!