10 week old bunny runny poo etc please help!

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Upper respiratory infections can be managed well with the appropriate antibiotics. I would take the sneezy buns back to the vet.
The baytril may just not be enough to take care of a URI

Be sure andgive aa probiotic like benebac while you are giving an antibiotic . You can get benebac from petstores like Petco or even use a equine probiotic like Probios which would be available at a farm store like farm and Fleet.
 
Took them to the vets yesterday instead and there both fine at the moment, no mucous really. But shes going to keep checking on them so I have to take them back again next week! So good news:) Thanks
 

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